# Available Software 
The following software is documented for use at MSI.

| Package Name | Support Level | Access Level |
| --- | --- | --- |
| [3dtests](pages/3dtests.md) | Secondary Support | Open Access |
| [abaqus](pages/abaqus.md) | Secondary Support | Limited Licenses |
| [abokia-blast](pages/abokia-blast.md) | Secondary Support | Open Access |
| [abyss](pages/abyss.md) | Secondary Support | Open Access |
| [adam](pages/adam.md) | Secondary Support | Open Access |
| [adf](pages/adf.md) | Secondary Support | Open Access |
| [advisor](pages/advisor.md) | Secondary Support | Limited Licenses |
| [afni](pages/afni.md) | Secondary Support | Open Access |
| [allpaths-lg](pages/allpaths-lg.md) | Secondary Support | Open Access |
| [alphafold](pages/alphafold.md) | Secondary Support | Open Access |
| [amber](pages/amber.md) | Secondary Support | Open Access |
| [amira](pages/amira.md) | Deprecated | Open Access |
| [amos](pages/amos.md) | Secondary Support | Open Access |
| [ampl](pages/ampl.md) | Deprecated | Open Access |
| [ams](pages/ams.md) | Secondary Support | Open Access |
| [anaconda](pages/anaconda.md) | Secondary Support | Open Access |
| [analyze](pages/analyze.md) | Secondary Support | Open Access |
| [ansys-hfss](pages/ansys-hfss.md) | Secondary Support | Limited Licenses |
| [ansys-maxwell-3d](pages/ansys-maxwell-3d.md) | Secondary Support | Limited Licenses |
| [ansys](pages/ansys.md) | Secondary Support | Limited Licenses |
| [antlr](pages/antlr.md) | Secondary Support | Open Access |
| [ants](pages/ants.md) | Secondary Support | Open Access |
| [armadillo](pages/armadillo.md) | Secondary Support | Open Access |
| [artemis](pages/artemis.md) | Secondary Support | Open Access |
| [aspera-client](pages/aspera-client.md) | Secondary Support | Open Access |
| [atk](pages/atk.md) | Secondary Support | Open Access |
| [augustus](pages/augustus.md) | Secondary Support | Open Access |
| [autoconf](pages/autoconf.md) | Secondary Support | Open Access |
| [autodock](pages/autodock.md) | Secondary Support | Open Access |
| [automake](pages/automake.md) | Secondary Support | Open Access |
| [avizo](pages/avizo.md) | Secondary Support | Limited Licenses |
| [bamtools](pages/bamtools.md) | Primary Support | Open Access |
| [bazel](pages/bazel.md) | Secondary Support | Open Access |
| [bcftools](pages/bcftools.md) | Primary Support | Open Access |
| [beagle](pages/beagle.md) | Secondary Support | Open Access |
| [beast](pages/beast.md) | Secondary Support | Open Access |
| [bedtools](pages/bedtools.md) | Primary Support | Open Access |
| [binutils](pages/binutils.md) | Primary Support | Open Access |
| [bioinformatics](pages/bioinformatics.md) | Secondary Support | Open Access |
| [bioperl](pages/bioperl.md) | Secondary Support | Open Access |
| [biopython](pages/biopython.md) | Secondary Support | Open Access |
| [blasr](pages/blasr.md) | Secondary Support | Open Access |
| [blast-plus](pages/blast-plus.md) | Secondary Support | Open Access |
| [blast](pages/blast.md) | Secondary Support | Open Access |
| [blat](pages/blat.md) | Secondary Support | Open Access |
| [boost](pages/boost.md) | Primary Support | Open Access |
| [bowtie2](pages/bowtie2.md) | Primary Support | Open Access |
| [bowtie](pages/bowtie.md) | Secondary Support | Open Access |
| [braker1](pages/braker1.md) | Primary Support | Open Access |
| [braker2](pages/braker2.md) | Secondary Support | Open Access |
| [breakdancer](pages/breakdancer.md) | Secondary Support | Open Access |
| [breseq](pages/breseq.md) | Secondary Support | Open Access |
| [busco](pages/busco.md) | Primary Support | Open Access |
| [bwa](pages/bwa.md) | Primary Support | Open Access |
| [bzip2](pages/bzip2.md) | Secondary Support | Open Access |
| [caffe](pages/caffe.md) | Secondary Support | Open Access |
| [cambridge-structural-database](pages/cambridge-structural-database.md) | Secondary Support | Open Access |
| [cap3-contig-assembly-program](pages/cap3-contig-assembly-program.md) | Secondary Support | Open Access |
| [ccp4](pages/ccp4.md) | Secondary Support | Open Access |
| [cd-hit](pages/cd-hit.md) | Secondary Support | Open Access |
| [cdo](pages/cdo.md) | Secondary Support | Open Access |
| [ceas](pages/ceas.md) | Secondary Support | Open Access |
| [celera-assembler](pages/celera-assembler.md) | Secondary Support | Open Access |
| [cesm](pages/cesm.md) | Secondary Support | Open Access |
| [cfitsio](pages/cfitsio.md) | Secondary Support | Open Access |
| [cgal](pages/cgal.md) | Secondary Support | Open Access |
| [cghub](pages/cghub.md) | Secondary Support | Open Access |
| [charmm](pages/charmm.md) | Secondary Support | RESTRICTED - Contact Helpdesk |
| [chenomx-nmr-suite](pages/chenomx-nmr-suite.md) | Deprecated | Open Access |
| [chimera](pages/chimera.md) | Secondary Support | Open Access |
| [circos](pages/circos.md) | Secondary Support | Open Access |
| [clara-parabricks](pages/clara-parabricks.md) | Secondary Support | Open Access |
| [clustalo](pages/clustalo.md) | Secondary Support | Open Access |
| [clustalx](pages/clustalx.md) | Secondary Support | Open Access |
| [cmake](pages/cmake.md) | Primary Support | Open Access |
| [cns](pages/cns.md) | Secondary Support | Open Access |
| [comsol](pages/comsol.md) | Primary Support | Limited Licenses |
| [conda](pages/conda.md) | Secondary Support | Open Access |
| [connectome-workbench](pages/connectome-workbench.md) | Secondary Support | Open Access |
| [consed](pages/consed.md) | Secondary Support | Open Access |
| [coot](pages/coot.md) | Secondary Support | Open Access |
| [cp2k](pages/cp2k.md) | Primary Support | Open Access |
| [cryosparc](pages/cryosparc.md) | Secondary Support | Open Access |
| [crystal](pages/crystal.md) | Secondary Support | Open Access |
| [cuda-sdk](pages/cuda-sdk.md) | Secondary Support | Open Access |
| [cuda](pages/cuda.md) | Primary Support | Open Access |
| [cudnn](pages/cudnn.md) | Secondary Support | Open Access |
| [cufflinks](pages/cufflinks.md) | Secondary Support | Open Access |
| [curl](pages/curl.md) | Secondary Support | Open Access |
| [cutadapt](pages/cutadapt.md) | Primary Support | Open Access |
| [cutesv](pages/cutesv.md) | Secondary Support | Open Access |
| [cytoscape](pages/cytoscape.md) | Secondary Support | Open Access |
| [defuse](pages/defuse.md) | Secondary Support | Open Access |
| [desmond](pages/desmond.md) | Secondary Support | Open Access |
| [diamond](pages/diamond.md) | Secondary Support | Open Access |
| [discovery-studio](pages/discovery-studio.md) | Secondary Support | Open Access |
| [dlcpar](pages/dlcpar.md) | Secondary Support | Open Access |
| [dock](pages/dock.md) | Secondary Support | Open Access |
| [duplicity](pages/duplicity.md) | Secondary Support | Open Access |
| [ea-utils](pages/ea-utils.md) | Secondary Support | Open Access |
| [eclipse](pages/eclipse.md) | Secondary Support | Open Access |
| [eggnog-mapper](pages/eggnog-mapper.md) | Secondary Support | Open Access |
| [eigen](pages/eigen.md) | Secondary Support | Open Access |
| [emboss](pages/emboss.md) | Secondary Support | Open Access |
| [ensight](pages/ensight.md) | Secondary Support | Open Access |
| [enut](pages/enut.md) | Secondary Support | Open Access |
| [errut](pages/errut.md) | Secondary Support | Open Access |
| [esmf](pages/esmf.md) | Secondary Support | Open Access |
| [espresso](pages/espresso.md) | Secondary Support | Open Access |
| [evidencemodeler](pages/evidencemodeler.md) | Secondary Support | Open Access |
| [exonerate](pages/exonerate.md) | Secondary Support | Open Access |
| [expat](pages/expat.md) | Secondary Support | Open Access |
| [falcon](pages/falcon.md) | Primary Support | Open Access |
| [fasta36](pages/fasta36.md) | Secondary Support | Open Access |
| [fastme](pages/fastme.md) | Secondary Support | Open Access |
| [fastqc](pages/fastqc.md) | Primary Support | Open Access |
| [fasttree](pages/fasttree.md) | Primary Support | Open Access |
| [fastx-toolkit](pages/fastx-toolkit.md) | Secondary Support | Open Access |
| [fca](pages/fca.md) | Secondary Support | Open Access |
| [febio](pages/febio.md) | Secondary Support | Open Access |
| [fenics](pages/fenics.md) | Secondary Support | Open Access |
| [ferret](pages/ferret.md) | Secondary Support | Open Access |
| [ffmpeg](pages/ffmpeg.md) | Secondary Support | Open Access |
| [fftw](pages/fftw.md) | Primary Support | Open Access |
| [fgmp](pages/fgmp.md) | Secondary Support | Open Access |
| [fix](pages/fix.md) | Secondary Support | Open Access |
| [flann](pages/flann.md) | Secondary Support | Open Access |
| [flex](pages/flex.md) | Secondary Support | Open Access |
| [fraggenescan](pages/fraggenescan.md) | Secondary Support | Open Access |
| [freebayes](pages/freebayes.md) | Primary Support | Open Access |
| [freesurfer](pages/freesurfer.md) | Secondary Support | Open Access |
| [freetype](pages/freetype.md) | Secondary Support | Open Access |
| [fsl](pages/fsl.md) | Secondary Support | Open Access |
| [fslview](pages/fslview.md) | Secondary Support | Open Access |
| [funannotate](pages/funannotate.md) | Secondary Support | Open Access |
| [gamess](pages/gamess.md) | Secondary Support | Open Access |
| [gatk-queue](pages/gatk-queue.md) | Secondary Support | Open Access |
| [gatk](pages/gatk.md) | Primary Support | Open Access |
| [gaussian](pages/gaussian.md) | Primary Support | RESTRICTED - Contact Helpdesk |
| [gc](pages/gc.md) | Secondary Support | Open Access |
| [gdal](pages/gdal.md) | Secondary Support | Open Access |
| [gdb](pages/gdb.md) | Secondary Support | Open Access |
| [gdc-data-transfer-tool](pages/gdc-data-transfer-tool.md) | Secondary Support | Open Access |
| [genemark-et](pages/genemark-et.md) | Secondary Support | RESTRICTED - Contact Helpdesk |
| [genetorrent-tools](pages/genetorrent-tools.md) | Secondary Support | Open Access |
| [genome-annotation-generator](pages/genome-annotation-generator.md) | Secondary Support | Open Access |
| [genometools](pages/genometools.md) | Secondary Support | Open Access |
| [geos](pages/geos.md) | Secondary Support | Open Access |
| [gettext](pages/gettext.md) | Secondary Support | Open Access |
| [gflags](pages/gflags.md) | Secondary Support | Open Access |
| [ghc](pages/ghc.md) | Secondary Support | Open Access |
| [giflib](pages/giflib.md) | Secondary Support | Open Access |
| [git](pages/git.md) | Secondary Support | Open Access |
| [glew](pages/glew.md) | Secondary Support | Open Access |
| [glimmer](pages/glimmer.md) | Secondary Support | Open Access |
| [glimmerhmm](pages/glimmerhmm.md) | Secondary Support | Open Access |
| [global-arrays](pages/global-arrays.md) | Secondary Support | Open Access |
| [globus-command-line-interface](pages/globus-command-line-interface.md) | Secondary Support | Open Access |
| [glog](pages/glog.md) | Secondary Support | Open Access |
| [gmap](pages/gmap.md) | Secondary Support | Open Access |
| [gmp](pages/gmp.md) | Secondary Support | Open Access |
| [gnu-compilers](pages/gnu-compilers.md) | Primary Support | Open Access |
| [gnu-scientific-library](pages/gnu-scientific-library.md) | Secondary Support | Open Access |
| [gnuplot](pages/gnuplot.md) | Secondary Support | Open Access |
| [go](pages/go.md) | Secondary Support | Open Access |
| [gopher-pipelines](pages/gopher-pipelines.md) | Primary Support | Open Access |
| [gpu-blast](pages/gpu-blast.md) | Secondary Support | Open Access |
| [grale-gamodules](pages/grale-gamodules.md) | Secondary Support | Open Access |
| [grale](pages/grale.md) | Secondary Support | Open Access |
| [graleeditor](pages/graleeditor.md) | Secondary Support | Open Access |
| [graleshell](pages/graleshell.md) | Secondary Support | Open Access |
| [graphpad-prism](pages/graphpad-prism.md) | Secondary Support | Limited Licenses |
| [graphviz](pages/graphviz.md) | Secondary Support | Open Access |
| [gromacs](pages/gromacs.md) | Primary Support | Open Access |
| [guppy](pages/guppy.md) | Secondary Support | Open Access |
| [gurobi](pages/gurobi.md) | Secondary Support | RESTRICTED - Contact Helpdesk |
| [gview](pages/gview.md) | Secondary Support | Open Access |
| [hadoop](pages/hadoop.md) | Secondary Support | Open Access |
| [haploview](pages/haploview.md) | Secondary Support | Open Access |
| [hdf5-eos](pages/hdf5-eos.md) | Secondary Support | Open Access |
| [hdf](pages/hdf.md) | Secondary Support | Open Access |
| [hdfeos-netcdf](pages/hdfeos-netcdf.md) | Secondary Support | Open Access |
| [hisat2](pages/hisat2.md) | Primary Support | Open Access |
| [hmmer](pages/hmmer.md) | Secondary Support | Open Access |
| [hoard](pages/hoard.md) | Secondary Support | Open Access |
| [hpctoolkit](pages/hpctoolkit.md) | Secondary Support | Open Access |
| [hpmpi](pages/hpmpi.md) | Secondary Support | Open Access |
| [htseq](pages/htseq.md) | Secondary Support | Open Access |
| [htslib](pages/htslib.md) | Secondary Support | Open Access |
| [huygens](pages/huygens.md) | Secondary Support | Open Access |
| [hwloc](pages/hwloc.md) | Secondary Support | Open Access |
| [hyphy](pages/hyphy.md) | Primary Support | Open Access |
| [hypre](pages/hypre.md) | Secondary Support | Open Access |
| [idl](pages/idl.md) | Secondary Support | Open Access |
| [igv](pages/igv.md) | Secondary Support | Open Access |
| [ilog](pages/ilog.md) | Secondary Support | Open Access |
| [imagej](pages/imagej.md) | Secondary Support | Open Access |
| [imaris](pages/imaris.md) | Secondary Support | Limited Licenses |
| [inspector](pages/inspector.md) | Secondary Support | Open Access |
| [integer-set-library](pages/integer-set-library.md) | Secondary Support | Open Access |
| [intel-compilers](pages/intel-compilers.md) | Primary Support | Limited Licenses |
| [intel-mpi](pages/intel-mpi.md) | Primary Support | Limited Licenses |
| [interproscan](pages/interproscan.md) | Secondary Support | Open Access |
| [ipa](pages/ipa.md) | Deprecated | Open Access |
| [itac](pages/itac.md) | Secondary Support | Limited Licenses |
| [itk-snap](pages/itk-snap.md) | Secondary Support | Open Access |
| [jacket](pages/jacket.md) | Secondary Support | Open Access |
| [jags](pages/jags.md) | Secondary Support | Open Access |
| [java](pages/java.md) | Primary Support | Open Access |
| [jellyfish](pages/jellyfish.md) | Secondary Support | Open Access |
| [jemalloc](pages/jemalloc.md) | Secondary Support | Open Access |
| [jets3t](pages/jets3t.md) | Secondary Support | Open Access |
| [jthread](pages/jthread.md) | Secondary Support | Open Access |
| [kallisto](pages/kallisto.md) | Secondary Support | Open Access |
| [kent-genomics-tools](pages/kent-genomics-tools.md) | Secondary Support | Open Access |
| [keras](pages/keras.md) | Secondary Support | Open Access |
| [lammps](pages/lammps.md) | Secondary Support | Open Access |
| [last](pages/last.md) | Secondary Support | Open Access |
| [lastz](pages/lastz.md) | Secondary Support | Open Access |
| [leveldb](pages/leveldb.md) | Secondary Support | Open Access |
| [libcairo](pages/libcairo.md) | Secondary Support | Open Access |
| [libdrmaa](pages/libdrmaa.md) | Secondary Support | Open Access |
| [libedit](pages/libedit.md) | Secondary Support | Open Access |
| [libgd](pages/libgd.md) | Secondary Support | Open Access |
| [liblpsolve](pages/liblpsolve.md) | Secondary Support | Open Access |
| [liblzma](pages/liblzma.md) | Secondary Support | Open Access |
| [libmatheval](pages/libmatheval.md) | Secondary Support | Open Access |
| [libsequence](pages/libsequence.md) | Secondary Support | Open Access |
| [libsvm](pages/libsvm.md) | Secondary Support | Open Access |
| [libtiff](pages/libtiff.md) | Secondary Support | Open Access |
| [libtool](pages/libtool.md) | Secondary Support | Open Access |
| [libungif](pages/libungif.md) | Secondary Support | Open Access |
| [libunistring](pages/libunistring.md) | Secondary Support | Open Access |
| [libxcb](pages/libxcb.md) | Secondary Support | Open Access |
| [libxz](pages/libxz.md) | Secondary Support | Open Access |
| [llvm](pages/llvm.md) | Secondary Support | Open Access |
| [lmdb](pages/lmdb.md) | Secondary Support | Open Access |
| [longranger](pages/longranger.md) | Secondary Support | Open Access |
| [lumerical-fdtd](pages/lumerical-fdtd.md) | Secondary Support | RESTRICTED - Contact Helpdesk |
| [lumerical_device](pages/lumerical_device.md) | Secondary Support | Open Access |
| [lumerical_interconnect](pages/lumerical_interconnect.md) | Secondary Support | Open Access |
| [lumerical_modesolutions](pages/lumerical_modesolutions.md) | Secondary Support | Open Access |
| [lumpy](pages/lumpy.md) | Secondary Support | Open Access |
| [macs](pages/macs.md) | Primary Support | Open Access |
| [mafft](pages/mafft.md) | Secondary Support | Open Access |
| [magma](pages/magma.md) | Secondary Support | Open Access |
| [maker](pages/maker.md) | Secondary Support | Open Access |
| [mamba](pages/mamba.md) | Secondary Support | Open Access |
| [materials-studio](pages/materials-studio.md) | Secondary Support | RESTRICTED - Contact Helpdesk |
| [mathematica](pages/mathematica.md) | Secondary Support | RESTRICTED - Contact Helpdesk |
| [matlab](pages/matlab.md) | Primary Support | Limited Licenses |
| [maven](pages/maven.md) | Secondary Support | Open Access |
| [mcl](pages/mcl.md) | Secondary Support | Open Access |
| [mega](pages/mega.md) | Secondary Support | Open Access |
| [megan](pages/megan.md) | Secondary Support | Open Access |
| [mercurial](pages/mercurial.md) | Secondary Support | Open Access |
| [metal](pages/metal.md) | Secondary Support | Open Access |
| [metamos](pages/metamos.md) | Secondary Support | Open Access |
| [metaphlan2](pages/metaphlan2.md) | Secondary Support | Open Access |
| [metis](pages/metis.md) | Secondary Support | Open Access |
| [mimics](pages/mimics.md) | Secondary Support | Limited Licenses |
| [minimap2](pages/minimap2.md) | Secondary Support | Open Access |
| [mira](pages/mira.md) | Secondary Support | Open Access |
| [mkl-and-cmkl](pages/mkl-and-cmkl.md) | Secondary Support | Open Access |
| [moe](pages/moe.md) | Secondary Support | Open Access |
| [mogal](pages/mogal.md) | Secondary Support | Open Access |
| [molden](pages/molden.md) | Secondary Support | Open Access |
| [molekel](pages/molekel.md) | Secondary Support | Open Access |
| [molpopgen](pages/molpopgen.md) | Secondary Support | Open Access |
| [molpro](pages/molpro.md) | Secondary Support | Open Access |
| [monolix](pages/monolix.md) | Secondary Support | Limited Licenses |
| [mopac](pages/mopac.md) | Secondary Support | Open Access |
| [mosaik](pages/mosaik.md) | Secondary Support | Open Access |
| [mothur](pages/mothur.md) | Secondary Support | Open Access |
| [mpc](pages/mpc.md) | Secondary Support | Open Access |
| [mpfr](pages/mpfr.md) | Secondary Support | Open Access |
| [mpiblast](pages/mpiblast.md) | Primary Support | Open Access |
| [mpich](pages/mpich.md) | Secondary Support | Open Access |
| [mrbayes](pages/mrbayes.md) | Secondary Support | Open Access |
| [mricrogl](pages/mricrogl.md) | Secondary Support | Open Access |
| [msff](pages/msff.md) | Secondary Support | Open Access |
| [msstats](pages/msstats.md) | Secondary Support | Open Access |
| [mummer](pages/mummer.md) | Primary Support | Open Access |
| [mumps](pages/mumps.md) | Secondary Support | Open Access |
| [muscle](pages/muscle.md) | Secondary Support | Open Access |
| [mvapich](pages/mvapich.md) | Secondary Support | Open Access |
| [mxm](pages/mxm.md) | Secondary Support | Open Access |
| [namd](pages/namd.md) | Primary Support | Open Access |
| [nanocount](pages/nanocount.md) | Secondary Support | Open Access |
| [nanofilt](pages/nanofilt.md) | Secondary Support | Open Access |
| [nanoplot](pages/nanoplot.md) | Secondary Support | Open Access |
| [nanostat](pages/nanostat.md) | Secondary Support | Open Access |
| [nanosv](pages/nanosv.md) | Secondary Support | Open Access |
| [ncbi_toolkit](pages/ncbi_toolkit.md) | Primary Support | Open Access |
| [nccl](pages/nccl.md) | Secondary Support | Open Access |
| [ncdu](pages/ncdu.md) | Secondary Support | Open Access |
| [ncl](pages/ncl.md) | Secondary Support | Open Access |
| [nco](pages/nco.md) | Secondary Support | Open Access |
| [ncview](pages/ncview.md) | Secondary Support | Open Access |
| [nedit](pages/nedit.md) | Secondary Support | Open Access |
| [netcdf](pages/netcdf.md) | Secondary Support | Open Access |
| [neuron](pages/neuron.md) | Secondary Support | Open Access |
| [nonmem-0](pages/nonmem-0.md) | Secondary Support | Limited Licenses |
| [nseg](pages/nseg.md) | Secondary Support | Open Access |
| [nvbio](pages/nvbio.md) | Secondary Support | Open Access |
| [nwchem](pages/nwchem.md) | Secondary Support | Open Access |
| [oases](pages/oases.md) | Secondary Support | Open Access |
| [octave](pages/octave.md) | Secondary Support | Open Access |
| [omega](pages/omega.md) | Secondary Support | Open Access |
| [openbabel](pages/openbabel.md) | Secondary Support | Open Access |
| [openbugs](pages/openbugs.md) | Secondary Support | Open Access |
| [opencl](pages/opencl.md) | Secondary Support | Open Access |
| [opencv](pages/opencv.md) | Secondary Support | Open Access |
| [openfoam](pages/openfoam.md) | Secondary Support | Open Access |
| [openmpi](pages/openmpi.md) | Primary Support | Open Access |
| [openstack-cli](pages/openstack-cli.md) | Secondary Support | Open Access |
| [orca](pages/orca.md) | Secondary Support | Open Access |
| [origin-lab](pages/origin-lab.md) | Secondary Support | Open Access |
| [orthofinder](pages/orthofinder.md) | Secondary Support | Open Access |
| [paml](pages/paml.md) | Secondary Support | Open Access |
| [pandaseq](pages/pandaseq.md) | Secondary Support | Open Access |
| [papi](pages/papi.md) | Secondary Support | Open Access |
| [parallel](pages/parallel.md) | Primary Support | Open Access |
| [paraview](pages/paraview.md) | Secondary Support | Open Access |
| [parmetis](pages/parmetis.md) | Secondary Support | Open Access |
| [partek-genomics-suite](pages/partek-genomics-suite.md) | Deprecated | Limited Licenses |
| [pasa](pages/pasa.md) | Secondary Support | Open Access |
| [pcl](pages/pcl.md) | Secondary Support | Open Access |
| [pcre](pages/pcre.md) | Secondary Support | Open Access |
| [pear](pages/pear.md) | Secondary Support | Open Access |
| [perfsuite](pages/perfsuite.md) | Secondary Support | Open Access |
| [perl](pages/perl.md) | Secondary Support | Open Access |
| [petsc](pages/petsc.md) | Secondary Support | Open Access |
| [pgi-cdk](pages/pgi-cdk.md) | Primary Support | Open Access |
| [phat](pages/phat.md) | Secondary Support | Open Access |
| [phenix](pages/phenix.md) | Secondary Support | Open Access |
| [phobius](pages/phobius.md) | Secondary Support | Open Access |
| [phrap](pages/phrap.md) | Secondary Support | Open Access |
| [phred](pages/phred.md) | Secondary Support | Open Access |
| [phylip](pages/phylip.md) | Secondary Support | Open Access |
| [phyml](pages/phyml.md) | Secondary Support | Open Access |
| [picard-tools](pages/picard-tools.md) | Primary Support | Open Access |
| [picrust2](pages/picrust2.md) | Secondary Support | Open Access |
| [pig](pages/pig.md) | Secondary Support | Open Access |
| [pilon](pages/pilon.md) | Primary Support | Open Access |
| [plink](pages/plink.md) | Secondary Support | Open Access |
| [pmpi](pages/pmpi.md) | Secondary Support | Open Access |
| [pnetcdf](pages/pnetcdf.md) | Secondary Support | Open Access |
| [pomoxis](pages/pomoxis.md) | Secondary Support | Open Access |
| [porechop](pages/porechop.md) | Secondary Support | Open Access |
| [postgresql](pages/postgresql.md) | Secondary Support | Open Access |
| [postview](pages/postview.md) | Secondary Support | Open Access |
| [povray](pages/povray.md) | Secondary Support | Open Access |
| [primer3](pages/primer3.md) | Secondary Support | Open Access |
| [prinseq](pages/prinseq.md) | Secondary Support | Open Access |
| [probabel](pages/probabel.md) | Secondary Support | Open Access |
| [prodigal](pages/prodigal.md) | Secondary Support | Open Access |
| [proj](pages/proj.md) | Secondary Support | Open Access |
| [proteinortho](pages/proteinortho.md) | Secondary Support | Open Access |
| [protobuf](pages/protobuf.md) | Secondary Support | Open Access |
| [psqlodbc](pages/psqlodbc.md) | Secondary Support | Open Access |
| [pymol](pages/pymol.md) | Secondary Support | Open Access |
| [python2](pages/python2.md) | Primary Support | Open Access |
| [python3](pages/python3.md) | Primary Support | Open Access |
| [python](pages/python.md) | Primary Support | Open Access |
| [qchem](pages/qchem.md) | Secondary Support | Open Access |
| [qhull](pages/qhull.md) | Secondary Support | Open Access |
| [qiime2](pages/qiime2.md) | Secondary Support | Open Access |
| [qiime](pages/qiime.md) | Secondary Support | Open Access |
| [qt](pages/qt.md) | Secondary Support | Open Access |
| [quake](pages/quake.md) | Secondary Support | Open Access |
| [quast](pages/quast.md) | Primary Support | Open Access |
| [qwt](pages/qwt.md) | Secondary Support | Open Access |
| [r-rich](pages/r-rich.md) | Primary Support | Open Access |
| [r](pages/r.md) | Primary Support | Open Access |
| [racon](pages/racon.md) | Secondary Support | Open Access |
| [ragel](pages/ragel.md) | Secondary Support | Open Access |
| [raxml](pages/raxml.md) | Primary Support | Open Access |
| [rclone-browser](pages/rclone-browser.md) | Secondary Support | Open Access |
| [rclone](pages/rclone.md) | Secondary Support | Open Access |
| [readline](pages/readline.md) | Secondary Support | Open Access |
| [recon](pages/recon.md) | Secondary Support | Open Access |
| [reframe-hpc](pages/reframe-hpc.md) | Secondary Support | Open Access |
| [repeat-masker](pages/repeat-masker.md) | Secondary Support | Open Access |
| [repeatmodeler](pages/repeatmodeler.md) | Secondary Support | Open Access |
| [repeatscout](pages/repeatscout.md) | Secondary Support | Open Access |
| [rhothetapost](pages/rhothetapost.md) | Secondary Support | Open Access |
| [ribopicker](pages/ribopicker.md) | Secondary Support | Open Access |
| [riss_util](pages/riss_util.md) | Primary Support | Open Access |
| [rmblast](pages/rmblast.md) | Secondary Support | Open Access |
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| [root](pages/root.md) | Secondary Support | Open Access |
| [rosetta](pages/rosetta.md) | Secondary Support | RESTRICTED - Contact Helpdesk |
| [rsem](pages/rsem.md) | Secondary Support | Open Access |
| [rstudio](pages/rstudio.md) | Secondary Support | Open Access |
| [ruby](pages/ruby.md) | Secondary Support | Open Access |
| [sam-tools](pages/sam-tools.md) | Primary Support | Open Access |
| [saoimage-ds9](pages/saoimage-ds9.md) | Secondary Support | Open Access |
| [sap](pages/sap.md) | Secondary Support | Open Access |
| [scalapack](pages/scalapack.md) | Secondary Support | Open Access |
| [scalasca](pages/scalasca.md) | Secondary Support | Open Access |
| [schrodinger](pages/schrodinger.md) | Primary Support | Limited Licenses |
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| [sequtils](pages/sequtils.md) | Secondary Support | Open Access |
| [serut](pages/serut.md) | Secondary Support | Open Access |
| [sga](pages/sga.md) | Secondary Support | Open Access |
| [shellp](pages/shellp.md) | Secondary Support | Open Access |
| [shelx](pages/shelx.md) | Secondary Support | Open Access |
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| [sniffles](pages/sniffles.md) | Secondary Support | Open Access |
| [soap](pages/soap.md) | Secondary Support | Open Access |
| [spades](pages/spades.md) | Primary Support | Open Access |
| [spark](pages/spark.md) | Secondary Support | Open Access |
| [sparsehash](pages/sparsehash.md) | Secondary Support | Open Access |
| [speedseq](pages/speedseq.md) | Secondary Support | Open Access |
| [sprng](pages/sprng.md) | Secondary Support | Open Access |
| [sra-toolkit](pages/sra-toolkit.md) | Secondary Support | Open Access |
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| [supermongo](pages/supermongo.md) | Secondary Support | Open Access |
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| [szip](pages/szip.md) | Secondary Support | Open Access |
| [t-coffee](pages/t-coffee.md) | Secondary Support | Open Access |
| [tandem-genotypes](pages/tandem-genotypes.md) | Secondary Support | Open Access |
| [tbl2asn](pages/tbl2asn.md) | Secondary Support | Open Access |
| [tcl](pages/tcl.md) | Secondary Support | Open Access |
| [tcltk](pages/tcltk.md) | Secondary Support | Open Access |
| [tecplot](pages/tecplot.md) | Secondary Support | Open Access |
| [tensorflow](pages/tensorflow.md) | Secondary Support | Open Access |
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| [trackd](pages/trackd.md) | Secondary Support | Open Access |
| [transdecoder](pages/transdecoder.md) | Secondary Support | Open Access |
| [trf](pages/trf.md) | Secondary Support | Open Access |
| [trimal](pages/trimal.md) | Secondary Support | Open Access |
| [trimmomatic](pages/trimmomatic.md) | Primary Support | Open Access |
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| [trinotate](pages/trinotate.md) | Primary Support | Open Access |
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| [trnascan](pages/trnascan.md) | Secondary Support | Open Access |
| [turbomole](pages/turbomole.md) | Secondary Support | Open Access |
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| [umgc](pages/umgc.md) | Secondary Support | Open Access |
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| [visual-studio](pages/visual-studio.md) | Secondary Support | Open Access |
| [vlc](pages/vlc.md) | Secondary Support | Open Access |
| [vmd](pages/vmd.md) | Secondary Support | Open Access |
| [vsearch](pages/vsearch.md) | Secondary Support | Open Access |
| [vtk](pages/vtk.md) | Secondary Support | Open Access |
| [vtune](pages/vtune.md) | Secondary Support | Open Access |
| [wannier](pages/wannier.md) | Secondary Support | Open Access |
| [weka](pages/weka.md) | Secondary Support | Open Access |
| [whirlgif](pages/whirlgif.md) | Secondary Support | Open Access |
| [wrf](pages/wrf.md) | Secondary Support | Open Access |
| [xerces](pages/xerces.md) | Secondary Support | Open Access |
| [xqilla](pages/xqilla.md) | Secondary Support | Open Access |
| [xz-utils](pages/xz-utils.md) | Secondary Support | Open Access |
| [zlib](pages/zlib.md) | Secondary Support | Open Access |
| [zsh](pages/zsh.md) | Secondary Support | Open Access |