# hyphy

## Summary

+ **Module Name:** hyphy
+ **Support Level:** Primary Support
+ **Software Access Level:** Open Access
+ **Home Page:** [http://hyphy.org/w/index.php/Main_Page](http://hyphy.org/w/index.php/Main_Page)

## Software Description

HyPhy stands for hypothesis testing using phylogenies. It is an
open-source software package for the analysis of genetic sequences using
techniques in phylogenetics, molecular evolution, and machine learning.
It also features a complete graphical user interface (GUI) and a rich
scripting language for limitless customization of analyses.
Additionally, HyPhy features support for parallel computing environments
(via message passing interface) and it can be compiled as a shared
library and called from other programming environments such as Python or
R.
## General Linux

To load this module for use in a Linux environment, you can run the command:

	module load hyphy

Depending on where you are working, there may be more than one version of hyphy available.
To see which modules are available for loading you can run:

	module avail hyphy