# nanocount

## Summary

+ **Module Name:** nanocount
+ **Support Level:** Secondary Support
+ **Software Access Level:** Open Access
+ **Home Page:** [https://github.com/tleonardi/NanoCount](https://github.com/tleonardi/NanoCount)

## Software Description

NanoCount estimates transcripts abundance from Oxford Nanopore
direct-RNA sequencing datasets, using an expectation-maximization
approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of
multi-mapping reads.
## General Linux

To load this module for use in a Linux environment, you can run the command:

	module load nanocount

Depending on where you are working, there may be more than one version of nanocount available.
To see which modules are available for loading you can run:

	module avail nanocount