# qiime2

## Summary

+ **Module Name:** qiime2
+ **Support Level:** Secondary Support
+ **Software Access Level:** Open Access
+ **Home Page:** [https://qiime2.org](https://qiime2.org)

## Software Description

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis
package with a focus on data and analysis transparency. QIIME 2 enables
researchers to start an analysis with raw DNA sequence data and finish
with publication-quality figures and statistical results. QIIME 2 is a
complete redesign and rewrite of the QIIME 1 microbiome analysis
pipeline.
## General Linux

To load this module for use in a Linux environment, you can run the command:

	module load qiime2

Depending on where you are working, there may be more than one version of qiime2 available.
To see which modules are available for loading you can run:

	module avail qiime2
## Slurm Example


	#!/bin/bash
	#SBATCH --job-name="rfm_RunQIIME2Test_job"
	#SBATCH --ntasks=1
	#SBATCH --ntasks-per-node=1
	#SBATCH --output=rfm_RunQIIME2Test_job.out
	#SBATCH --error=rfm_RunQIIME2Test_job.err
	#SBATCH --time=0:10:0
	#SBATCH -p msismall
	module load qiime2/2019.1
	qiime info