# trinity

## Summary

+ **Module Name:** trinityrnaseq
+ **Support Level:** Secondary Support
+ **Software Access Level:** Open Access
+ **Home Page:** [http://trinityrnaseq.sourceforge.net/](http://trinityrnaseq.sourceforge.net/)

## Software Description

Trinity is a program for the efficient and robust de novo (no reference
genome required) reconstruction of transcriptomes from RNA-seq data.
Trinity produces a large number of intermediate files (500,000 to
1,000,000). The MSI filesystem limits each group to a maximum of 1
million files. Therefore it is recommended that you configure Trinity to
write output to /scratch (using the option \"\--output
/scratch/trinity\"), where there is no file number limit, and copy the
fasta assembly file back to your group folder when Trinity has finished.
## General Linux

To load this module for use in a Linux environment, you can run the command:

	module load trinityrnaseq

Depending on where you are working, there may be more than one version of trinityrnaseq available.
To see which modules are available for loading you can run:

	module avail trinityrnaseq