adam

Summary

• Module Name: adam

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: http://adam.readthedocs.io/en/latest/

Software Description

ADAM is a library and command line tool that enables the use of Apache Spark to parallelize genomic data analysis across cluster/cloud computing environments. ADAM uses a set of schemas to describe genomic sequences, reads, variants/genotypes, and features, and can be used with data in legacy genomic file formats such as SAM/BAM/CRAM, BED/GFF3/GTF, and VCF, as well as data stored in the columnar Apache Parquet format.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load adam

Depending on where you are working, there may be more than one version of adam available. To see which modules are available for loading you can run:

module avail adam