cd-hit

Summary

• Module Name: cd-hit

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: http://weizhongli-lab.org/cd-hit/

Software Description

CD-HIT is a program for clustering large protein database at high sequence identity threshold. The program removes redundant sequences and generate a database of only the representatives. It can be applied in protein family classification, domain analysis, organizing large protein databases, improving performance of database search, and much more.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load cd-hit

Depending on where you are working, there may be more than one version of cd-hit available. To see which modules are available for loading you can run:

module avail cd-hit