coot

Summary

• Module Name: coot

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/

Software Description

The (Crystallographic Object)-Oriented Toolkit Displays maps and models and allows certain model manipulations: idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, model validation and other stuff. Coot is part of the CCP4 Molecular Graphics Project. The Molecular Graphics Project has a wide remit and crystallographic map fitting is a part of that. The Coot functions have their own interface and some of them will be integrated into CCP4mg in due course.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load coot

Depending on where you are working, there may be more than one version of coot available. To see which modules are available for loading you can run:

module avail coot