cufflinks
Summary
Module Name: cufflinks
Support Level: Secondary Support
Software Access Level: Open Access
Software Description
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load cufflinks
Depending on where you are working, there may be more than one version of cufflinks available. To see which modules are available for loading you can run:
module avail cufflinks