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cufflinks

Summary

• Module Name: cufflinks

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: http://cole-trapnell-lab.github.io/cufflinks/

Software Description

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load cufflinks

Depending on where you are working, there may be more than one version of cufflinks available. To see which modules are available for loading you can run:

module avail cufflinks