repeat-masker

Summary

• Module Name: repeatmasker

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: http://www.repeatmasker.org/

Software Description

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns).

General Linux

To load this module for use in a Linux environment, you can run the command:

module load repeatmasker

Depending on where you are working, there may be more than one version of repeatmasker available. To see which modules are available for loading you can run:

module avail repeatmasker