lumpy

Summary

• Module Name: lumpy

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-6-r84

Software Description

lumpy is a general probabilistic framework for structural variant discovery. LUMPY is designed to consider both paired-end and split-read alignments, and can also consider each independently.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load lumpy

Depending on where you are working, there may be more than one version of lumpy available. To see which modules are available for loading you can run:

module avail lumpy