nanocount

Summary

• Module Name: nanocount

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: https://github.com/tleonardi/NanoCount

Software Description

NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load nanocount

Depending on where you are working, there may be more than one version of nanocount available. To see which modules are available for loading you can run:

module avail nanocount