pasa

Summary

• Module Name: pasa

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: https://github.com/PASApipeline/PASApipeline

Software Description

PASA, acronym for Program to Assemble Spliced Alignments (and pronounced ‘pass-uh’), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load pasa

Depending on where you are working, there may be more than one version of pasa available. To see which modules are available for loading you can run:

module avail pasa