ssaha2

Summary

• Module Name: ssaha2

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: http://www.sanger.ac.uk/resources/software/ssaha2/

Software Description

SSAHA2 (Sequence Search and Alignment by Hashing Algorithm) is a pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences.SSAHA2 reads of most sequencing platforms (ABI-Sanger, Roche 454, Illumina-Solexa) and a range of output formats (SAM, CIGAR, PSL etc.) are supported. A pile-up pipeline for analysis and genotype calling is available as a separate package.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load ssaha2

Depending on where you are working, there may be more than one version of ssaha2 available. To see which modules are available for loading you can run:

module avail ssaha2