CellChat

• Package source: GitHub (jinworks/CellChat)

• Estimated install time: 20+ minutes, with most time spent installing devtools

Installation steps

srun -N 1 -n 10 --mem 10G -t 20 -p msismall --pty bash
module load R/4.4.0-openblas-rocky8 freetype/2.11.1-gcc-13.1.0-avhkc6q libwebp/1.6.0
R
options(Ncpus = 10)
install.packages("BiocManager")
install.packages("devtools")
BiocManager::install("Biobase")
BiocManager::install("BiocNeighbors")
devtools::install_github("jokergoo/ComplexHeatmap")
devtools::install_github("jinworks/CellChat")

Notes

The recorded Help Desk notes recommend running this in an interactive session with at least 10 tasks.