hyphy

Summary

Software Description

HyPhy stands for hypothesis testing using phylogenies. It is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It also features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load hyphy

Depending on where you are working, there may be more than one version of hyphy available. To see which modules are available for loading you can run:

module avail hyphy