transdecoder

Summary

• Module Name: transdecoder

• Support Level: Secondary Support

• Software Access Level: Open Access

• Home Page: http://transdecoder.github.io/

Software Description

TransDecoder is software for identifying candidate coding regions within transcript sequences, including those from de novo RNA-Seq transcript assembly via Trinity, or from RNA-Seq alignments to the genome using Tophat and Cufflinks.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load transdecoder

Depending on where you are working, there may be more than one version of transdecoder available. To see which modules are available for loading you can run:

module avail transdecoder